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Summary
- Splice variants
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DB built by FlyBase

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Gene: nxf2 FBgn0036640

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Description

nuclear RNA export factor 2

Gene Synonyms

Location

Primary_assembly 3L: 16,576,859-16,580,306 reverse strand.

BDGP6.54:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 28 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nxf2-RA	FBtr0089478	2863	841aa	FBpp0088483	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VV73	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nxf2-RB	FBtr0089479	2771	841aa	FBpp0088484	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VV73	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nxf2-RC	FBtr0331561	2723	825aa	FBpp0303951	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PI81	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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