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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
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DB built by FlyBase

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Gene: CG3961 FBgn0036821

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Location

Primary_assembly 3L: 18,878,250-18,890,483 reverse strand.

BDGP6.54:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 153 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3961-RA	FBtr0075077	3373	704aa	FBpp0074844	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C4XVE5 Q95R88 Q960G4 Q9VVT8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG3961-RC	FBtr0075078	3309	704aa	FBpp0074845	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VVT8	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG3961-RE	FBtr0333712	3022	666aa	FBpp0305861	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCX4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG3961-RD	FBtr0302322	2649	654aa	FBpp0291528	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E2QCY2	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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