Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG11241 FBgn0037186

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Gene Synonyms

Location

Primary_assembly 3L: 22,732,013-22,738,420 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 123 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG11241-RC	FBtr0347061	3149	518aa	FBpp0312455	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E6R2	NM_001316460 NM_001316460.1 NM_168960.4 NP_001303389 NP_001303389.1 NP_730741.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG11241-RB	FBtr0113188	2010	518aa	FBpp0112101	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RVI4 A8E6R2	NM_001316460.1 NM_168960 NM_168960.4 NP_001303389.1 NP_730741 NP_730741.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG11241-RA	FBtr0078536	1874	508aa	FBpp0078188	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NN14 Q95TT3 Q9VNR7	NM_141156 NM_141156.4 NP_649413 NP_649413.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays