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DB built by FlyBase

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Gene: kat-60L1 FBgn0037375

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Description

katanin p60-like 1

Gene Synonyms

Location

Primary_assembly 3R: 5,781,762-5,787,465 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 8 transcripts (splice variants), 29 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
kat-60L1-RG	FBtr0300740	2479	673aa	FBpp0289964	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4QPP5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
kat-60L1-RB	FBtr0078628	2467	669aa	FBpp0078277	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VNI0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
kat-60L1-RE	FBtr0300738	2350	673aa	FBpp0289962	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4QPP5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
kat-60L1-RC	FBtr0300736	2338	669aa	FBpp0289960	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VNI0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
kat-60L1-RH	FBtr0300741	2313	609aa	FBpp0289965	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ62	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
kat-60L1-RA	FBtr0078627	2301	605aa	FBpp0078276	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961H1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
kat-60L1-RD	FBtr0300737	2184	609aa	FBpp0289961	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ62	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
kat-60L1-RF	FBtr0300739	2172	605aa	FBpp0289963	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961H1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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