Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
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DB built by FlyBase

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Gene: pasi1 FBgn0038545

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Description

pasiflora 1

Gene Synonyms

Location

Primary_assembly 3R: 17,795,075-17,796,317 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 2 transcripts (splice variants), 75 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pasi1-RB	FBtr0305007	874	169aa	FBpp0293544	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEF6	NM_001260229 NM_001260229.2 NM_142398.4 NP_001247158 NP_001247158.1 NP_650655.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
pasi1-RA	FBtr0083513	816	169aa	FBpp0082937	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEF6	NM_001260229.2 NM_142398 NM_142398.4 NP_001247158.1 NP_650655 NP_650655.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays