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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Cellular component
- GO: Biological process
- GO: Molecular function
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DB built by FlyBase

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Gene: CG3744 FBgn0039240

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Location

Primary_assembly 3R: 24,871,202-24,876,654 reverse strand.

BDGP6.54:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 71 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3744-RD	FBtr0334574	4723	1102aa	FBpp0306641	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC19	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG3744-RF	FBtr0334576	4543	1042aa	FBpp0306643	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0C4FEI9 Q9VC20	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG3744-RG	FBtr0334577	4476	1102aa	FBpp0306644	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC19	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG3744-RE	FBtr0334575	3699	1042aa	FBpp0306642	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC20	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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