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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- GO: Biological process
- GO: Cellular component
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DB built by FlyBase

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Gene: CG4730 FBgn0039355

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Gene Synonyms

Location

Primary_assembly 3R: 25,677,072-25,678,682 reverse strand.

BDGP6.54:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 18 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4730-RC	FBtr0331364	1502	392aa	FBpp0303782	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBN9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG4730-RA	FBtr0084934	1492	392aa	FBpp0084308	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBN9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG4730-RB	FBtr0331363	1397	334aa	FBpp0303781	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHV9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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