Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
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Genetic Variation
- Variant table
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- Structural variants
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External references
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ID History
- Gene history

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DB built by FlyBase

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Gene: CG5028 FBgn0039358

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Location

Primary_assembly 3R: 25,680,845-25,683,780 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 180 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5028-RB	FBtr0113289	1934	402aa	FBpp0112201	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT18	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5028-RD	FBtr0113291	1742	393aa	FBpp0112203	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRC1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG5028-RC	FBtr0113290	1608	392aa	FBpp0112202	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRB8	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG5028-RA	FBtr0084901	1407	402aa	FBpp0084275	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT18	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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