Summary
- Splice variants
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DB built by FlyBase

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Gene: Ekar FBgn0039916

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Description

Eye-enriched kainate receptor

Gene Synonyms

Location

Primary_assembly 4: 636,131-646,556 reverse strand.

BDGP6.32:AE014135.4

About this gene

This gene has 3 transcripts (splice variants), 107 orthologues and 41 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Ekar-RB	FBtr0110906	2913	899aa	FBpp0110206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KIF2	NM_001042785 NM_001042785.2 NP_001036250 NP_001036250.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Ekar-RA	FBtr0089102	2971	669aa	FBpp0088171	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6IDJ4 Q8MQM7 Q9V4E9	NM_143674 NM_143674.2 NP_651931 NP_651931.1	-
Ekar-RD	FBtr0344874	2910	898aa	FBpp0311188	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GQ97	NM_001042786 NM_001042786.2 NP_001036251 NP_001036251.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays