Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: Vav FBgn0040068

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Description

Vav guanine nucleotide exchange factor

Gene Synonyms

Location

Primary_assembly X: 19,261,820-19,273,280 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Vav-RC	FBtr0113316	4036	1001aa	FBpp0112228	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JUQ9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Vav-RB	FBtr0074678	4603	793aa	FBpp0074449	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NHV9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Vav-RD	FBtr0333759	3925	964aa	FBpp0305901	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHJ6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Vav-RA	FBtr0074677	3412	793aa	FBpp0074448	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NHV9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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