Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
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DB built by FlyBase

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Gene: CG5938 FBgn0046247

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Location

Primary_assembly 3R: 27,274,794-27,277,418 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants) and 79 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5938-RD	FBtr0085160	1673	168aa	FBpp0084530	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI06 Q8T015	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5938-RF	FBtr0334729	1615	168aa	FBpp0306777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI06	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5938-RC	FBtr0085162	1531	168aa	FBpp0084532	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI06	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5938-RB	FBtr0085159	1401	168aa	FBpp0084529	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI06	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5938-RA	FBtr0085161	1255	168aa	FBpp0084531	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI06	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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