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DB built by FlyBase

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Gene: Pif1B FBgn0046874

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Description

PFTAIRE-interacting factor 1B

Gene Synonyms

Location

Primary_assembly 3R: 8,774,286-8,801,176 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 5 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pif1B-RD	FBtr0332504	7780	1041aa	FBpp0304780	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHL6	NM_001031984.2 NM_001031985.1 NM_001275457.3 NM_001275458 NM_001275458.2 NM_001316570.1 NP_001027155.1 NP_001027156.1 NP_001262386.1 NP_001262387 NP_001262387.1 NP_001303499.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pif1B-RC	FBtr0332503	7761	1041aa	FBpp0304779	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHL6	NM_001031984.2 NM_001031985.1 NM_001275457 NM_001275457.3 NM_001275458.2 NM_001316570.1 NP_001027155.1 NP_001027156.1 NP_001262386 NP_001262386.1 NP_001262387.1 NP_001303499.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pif1B-RE	FBtr0433508	7694	1041aa	FBpp0390640	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHL6	NM_001031984.2 NM_001031985.1 NM_001275457.3 NM_001275458.2 NM_001316570 NM_001316570.1 NP_001027155.1 NP_001027156.1 NP_001262386.1 NP_001262387.1 NP_001303499 NP_001303499.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pif1B-RA	FBtr0091716	6324	1041aa	FBpp0099707	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHL6	NM_001031984.2 NM_001031985 NM_001031985.1 NM_001275457.3 NM_001275458.2 NM_001316570.1 NP_001027155.1 NP_001027156 NP_001027156.1 NP_001262386.1 NP_001262387.1 NP_001303499.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pif1B-RB	FBtr0091717	4148	1041aa	FBpp0099708	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C4JC98 Q8WTI7 Q9VHL6 Q9Y0Z8	NM_001031984 NM_001031984.2 NM_001031985.1 NM_001275457.3 NM_001275458.2 NM_001316570.1 NP_001027155 NP_001027155.1 NP_001027156.1 NP_001262386.1 NP_001262387.1 NP_001303499.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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