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Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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- GO: Biological process
- GO: Cellular component
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DB built by FlyBase

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Gene: CG30389 FBgn0050389

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Gene Synonyms

Location

Primary_assembly 2R: 21,148,265-21,160,545 reverse strand.

BDGP6.54:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 71 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG30389-RE	FBtr0330235	4193	1037aa	FBpp0303268	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEW2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG30389-RD	FBtr0310423	4678	980aa	FBpp0302571	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E901 Q961P6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30389-RA	FBtr0071632	4022	980aa	FBpp0071555	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E901	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30389-RF	FBtr0330236	4022	1009aa	FBpp0303269	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFE6	-	-
CG30389-RC	FBtr0071633	4006	980aa	FBpp0071556	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E901	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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