Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG31729 FBgn0051729

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Location

Primary_assembly 2L: 13,289,997-13,301,668 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 101 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG31729-RB	FBtr0080461	4912	1256aa	FBpp0080040	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VK06	NM_135790 NM_135790.4 NP_609634 NP_609634.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG31729-RA	FBtr0080462	4167	1087aa	FBpp0080041	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V5C6 Q9VK04	NM_165038 NM_165038.3 NP_723806 NP_723806.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG31729-RD	FBtr0344851	3999	994aa	FBpp0311166	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J9M9	NM_001298958 NM_001298958.1 NP_001285887 NP_001285887.1	-
CG31729-RC	FBtr0344140	3963	1076aa	FBpp0310554	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JDZ6	NM_001298957 NM_001298957.1 NP_001285886 NP_001285886.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays