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DB built by FlyBase

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Gene: Sec16 FBgn0052654

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Description

Secretory 16

Gene Synonyms

Location

Primary_assembly X: 12,596,047-12,609,910 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 6 transcripts (splice variants) and 48 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sec16-RI	FBtr0340105	7635	2326aa	FBpp0309104	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YGW7 A9YGX4 F6J236 X2JEM2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Sec16-RJ	FBtr0340106	8008	2242aa	FBpp0309105	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JEY9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sec16-RF	FBtr0310304	7900	2250aa	FBpp0301987	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHF1 Q8SXX7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sec16-RH	FBtr0340104	7693	2137aa	FBpp0309103	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JJP5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sec16-RD	FBtr0113444	7320	2221aa	FBpp0112356	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JUU3 A9YGX8 A9YGY7 F6J248 F6J249 F6J250 Q5BI67 Q8T0U9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sec16-RE	FBtr0113445	7226	2021aa	FBpp0112357	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JUU1 Q5BI67	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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