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DB built by FlyBase

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Gene: Kdm4B FBgn0053182

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Description

Lysine demethylase 4B

Gene Synonyms

Location

Primary_assembly 2R: 13,176,553-13,198,337 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 88 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Kdm4B-RE	FBtr0310498	5718	717aa	FBpp0302636	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFJ8 C1C579 G4LU55	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Kdm4B-RD	FBtr0302054	2667	590aa	FBpp0291264	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH52 Q9V6L0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Kdm4B-RC	FBtr0302053	2585	590aa	FBpp0291263	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E6M9 E1JH52 Q9V6L0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Kdm4B-RB	FBtr0302052	2225	590aa	FBpp0291262	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH52 Q9V6L0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Kdm4B-RA	FBtr0087770	2184	590aa	FBpp0086883	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH52 Q9V6L0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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