Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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- Orthologues
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Pan-taxonomic Compara
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- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
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DB built by FlyBase

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Gene: trv FBgn0085391

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Description

trivet

Gene Synonyms

Location

Primary_assembly 3R: 28,026,615-28,090,740 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
trv-RI	FBtr0344217	2729	651aa	FBpp0310623	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIZ9 Q1ECA2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
trv-RF	FBtr0334897	7452	498aa	FBpp0306918	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
trv-RE	FBtr0334896	5991	509aa	FBpp0306917	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHB5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
trv-RJ	FBtr0344218	2530	508aa	FBpp0310624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LIU0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
trv-RA	FBtr0112583	2495	505aa	FBpp0111495	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VAX3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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