Summary
- Splice variants
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DB built by FlyBase

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Gene: CG42235 FBgn0250757

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Gene Synonyms

Location

Primary_assembly 3R: 25,907,022-25,921,046 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 255 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42235-RD	FBtr0290139	2389	698aa	FBpp0288579	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1EC16 Q9VBK1	NM_143189 NM_143189.4 NP_651446 NP_651446.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG42235-RA	FBtr0290141	2561	695aa	FBpp0288581	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEH2 B7Z0Q5	NM_001144640 NM_001144640.2 NP_001138112 NP_001138112.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42235-RE	FBtr0290138	2500	691aa	FBpp0288578	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q29QS6 Q9VBK0	NM_143190 NM_143190.4 NP_651447 NP_651447.2	-
CG42235-RB	FBtr0290140	2359	695aa	FBpp0288580	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0Q4 Q29QS5	NM_001144639 NM_001144639.3 NP_001138111 NP_001138111.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42235-RC	FBtr0290137	2328	689aa	FBpp0288577	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBK2	NM_170250 NM_170250.3 NP_733129 NP_733129.1	-

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Summary

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Gene-based displays