Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: beta-Spec FBgn0250788

.

Description

beta Spectrin

Gene Synonyms

Location

Primary_assembly X: 17,657,372-17,669,371 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 128 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
beta-Spec-RB	FBtr0334404	7718	2308aa	FBpp0306507	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF16	NM_001272731 NM_001272731.1 NP_001259660 NP_001259660.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
beta-Spec-RC	FBtr0334405	7896	2147aa	FBpp0306508	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHG4	NM_001272732 NM_001272732.1 NP_001259661 NP_001259661.1	-
beta-Spec-RA	FBtr0074454	7671	2291aa	FBpp0074228	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q00963 X4YME1	NM_078664 NM_078664.3 NP_523388 NP_523388.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

.

Summary

.

.

Gene-based displays