Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: alpha-Spec FBgn0250789

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Description

alpha Spectrin

Gene Synonyms

Location

Primary_assembly 3L: 1,778,485-1,795,328 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 135 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
alpha-Spec-RB	FBtr0332878	7721	2457aa	FBpp0305100	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGV6	NM_001274357 NM_001274357.1 NP_001261286 NP_001261286.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
alpha-Spec-RC	FBtr0332879	8317	2447aa	FBpp0305101	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBI5	NM_001274358 NM_001274358.1 NP_001261287 NP_001261287.1	-
alpha-Spec-RD	FBtr0332880	8251	2425aa	FBpp0305102	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDQ0	NM_001274359 NM_001274359.1 NP_001261288 NP_001261288.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
alpha-Spec-RA	FBtr0072789	8221	2415aa	FBpp0072672	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P13395	NM_057391 NM_057391.4 NP_476739 NP_476739.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays