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- Splice variants
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DB built by FlyBase

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Gene: CG42288 FBgn0259184

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Gene Synonyms

Location

Primary_assembly 2R: 14,091,031-14,091,814 forward strand.

BDGP6.54:AE013599.5

About this gene

This gene has 2 transcripts (splice variants), 41 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42288-RA	FBtr0299668	648	160aa	FBpp0288946	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9K9 C9QNX9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG42288-RB	FBtr0307217	639	157aa	FBpp0298046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K721	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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