Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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Genetic Variation
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DB built by FlyBase

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Gene: CG42322 FBgn0259222

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Gene Synonyms

Location

Primary_assembly 3R: 20,740,108-20,756,639 forward strand.

BDGP6.54:AE014297.3

About this gene

This gene has 6 transcripts (splice variants) and 79 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42322-RN	FBtr0345263	3657	743aa	FBpp0311440	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V362	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG42322-RJ	FBtr0299772	3627	733aa	FBpp0289050	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0N3 Q4V6I1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42322-RI	FBtr0299771	3614	733aa	FBpp0289049	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0N3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42322-RL	FBtr0305057	3534	578aa	FBpp0293594	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T0M8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42322-RM	FBtr0305058	3269	578aa	FBpp0293595	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DML6 F3YDP4 Q8T0M8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42322-RD	FBtr0299768	2049	578aa	FBpp0289046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T0M8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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