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Summary
- Splice variants
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DB built by FlyBase

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Gene: PGRP-LD FBgn0260458

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Description

Peptidoglycan recognition protein LD

Gene Synonyms

Location

Primary_assembly 3L: 5,780,051-5,784,685 forward strand.

BDGP6.54:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 19 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
PGRP-LD-RD	FBtr0114577	2720	327aa	FBpp0113069	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0C3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PGRP-LD-RA	FBtr0091709	3600	282aa	FBpp0099635	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GN97	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PGRP-LD-RB	FBtr0091710	3563	282aa	FBpp0099636	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GN97	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PGRP-LD-RC	FBtr0091711	3010	282aa	FBpp0099637	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GN97	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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