Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG42594 FBgn0260971

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Location

Primary_assembly X: 4,840,833-4,906,575 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 618 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42594-RC	FBtr0345703	4812	1039aa	FBpp0311747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJG7	NM_001169197 NM_001169197.3 NP_001162668 NP_001162668.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42594-RD	FBtr0345704	5127	905aa	FBpp0311748	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJG8	NM_001169196.3 NM_001297940 NM_001297940.1 NP_001162667.1 NP_001284869 NP_001284869.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42594-RA	FBtr0301749	4812	905aa	FBpp0290963	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJG8	NM_001169196 NM_001169196.3 NM_001297940.1 NP_001162667 NP_001162667.1 NP_001284869.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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