Alhambra
Primary_assembly 3R: 7,094,596-7,124,185 reverse strand.
BDGP6.32:AE014297.3
This gene has 13 transcripts (splice variants), 128 orthologues and 3 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Alh-RP | FBtr0334677 | 6029 | 1717aa | FBpp0306738 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGP1 Q962D1 | NM_001275403 NM_001275403.1 NP_001262332 NP_001262332.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Alh-RJ | FBtr0330367 | 5420 | 1448aa | FBpp0303393 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JQU6 N0A8E1 Q058V5 Q962D2 Q9BMZ8 | NM_001104227 NM_001104227.3 NP_001097697 NP_001097697.2 | - |
| Alh-RH | FBtr0300494 | 5420 | 1165aa | FBpp0289721 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JJ76 Q058V5 | NM_001170065 NM_001170065.2 NP_001163536 NP_001163536.1 | - |
| Alh-RI | FBtr0300495 | 5327 | 1134aa | FBpp0289722 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JJ75 | NM_001170066 NM_001170066.2 NP_001163537 NP_001163537.1 | - |
| Alh-RO | FBtr0334676 | 5324 | 1133aa | FBpp0306737 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFQ4 | NM_001275402 NM_001275402.1 NP_001262331 NP_001262331.1 | - |
| Alh-RM | FBtr0334674 | 5196 | 1084aa | FBpp0306735 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8INT1 | NM_169170 NM_169170.3 NP_731131 NP_731131.2 | - |
| Alh-RN | FBtr0334675 | 5100 | 1052aa | FBpp0306736 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KF76 | NM_001275401 NM_001275401.1 NP_001262330 NP_001262330.1 | - |
| Alh-RK | FBtr0334672 | 5033 | 1385aa | FBpp0306733 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGB4 | NM_001275399 NM_001275399.1 NP_001262328 NP_001262328.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Alh-RA | FBtr0081612 | 5006 | 1376aa | FBpp0081129 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7YU77 Q8SZW9 Q962D1 Q9VI63 | NM_079526 NM_079526.3 NP_524250 NP_524250.3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Alh-RF | FBtr0113200 | 4906 | 1165aa | FBpp0112112 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JQU7 | NM_001104228 NM_001104228.3 NP_001097698 NP_001097698.1 | - |
| Alh-RL | FBtr0334673 | 4850 | 1332aa | FBpp0306734 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFD2 | NM_001275400 NM_001275400.1 NP_001262329 NP_001262329.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Alh-RD | FBtr0081613 | 4823 | 1323aa | FBpp0081130 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KSZ0 | NM_169171 NM_169171.2 NP_731132 NP_731132.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Alh-RB | FBtr0081614 | 3883 | 824aa | FBpp0081131 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VI61 | NM_169172 NM_169172.3 NP_731133 NP_731133.1 | - |
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