Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: CG42613 FBgn0261262

.

Location

Primary_assembly 3R: 18,929,196-18,978,088 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 544 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42613-RE	FBtr0304685	6672	1188aa	FBpp0293228	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K760 D0IQI1	NM_001260256 NM_001260256.1 NP_001247185 NP_001247185.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42613-RF	FBtr0304686	5507	845aa	FBpp0293229	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K686 B3DNL6	NM_001260257 NM_001260257.2 NP_001247186 NP_001247186.1	-
CG42613-RG	FBtr0304687	4961	1051aa	FBpp0293230	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6C8	NM_001260258 NM_001260258.1 NP_001247187 NP_001247187.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42613-RH	FBtr0304688	4927	1155aa	FBpp0293231	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961I3 Q9VE20	NM_169844 NM_169844.4 NP_732390 NP_732390.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.

Gene-based displays