Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG42661 FBgn0261537

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Location

Primary_assembly 3L: 7,465,509-7,468,808 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 3 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42661-RB	FBtr0346506	2597	141aa	FBpp0312124	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAT1	NM_001202132.1 NM_001300040 NM_001300040.1 NP_001189061.1 NP_001286969 NP_001286969.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG42661-RA	FBtr0302559	2531	141aa	FBpp0291715	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAT1	NM_001202132 NM_001202132.1 NM_001300040.1 NP_001189061 NP_001189061.1 NP_001286969.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays