Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG42671 FBgn0261553

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Location

Chromosome 3L: 11,214,505-11,230,745 forward strand.

BDGP6.28:AE014296.5

About this gene

This gene has 11 transcripts (splice variants) and 27 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	FBtr0339906	5900	1234aa	FBpp0308938	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J8Y9	NM_001300099.1 NP_001287028.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0345849	5753	1302aa	FBpp0311808	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEP5 X2JGK1	NM_001300100.1 NM_001300101.1 NP_001287029.1 NP_001287030.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	FBtr0339907	5520	1302aa	FBpp0308939	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JGK1	NM_001300100.1 NM_001300101.1 NP_001287029.1 NP_001287030.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	FBtr0304933	4917	1233aa	FBpp0293472	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	NM_001202154.1 NM_001259786.2 NM_001259787.1 NM_140197.3 NM_168453.2 NP_001189083.1 NP_001246715.1 NP_001246716.1 NP_648454.1 NP_729690.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0304934	4879	1233aa	FBpp0293473	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	NM_001202154.1 NM_001259786.2 NM_001259787.1 NM_140197.3 NM_168453.2 NP_001189083.1 NP_001246715.1 NP_001246716.1 NP_648454.1 NP_729690.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0302697	4852	1233aa	FBpp0291837	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NR26 Q9VTH2	NM_001202154.1 NM_001259786.2 NM_001259787.1 NM_140197.3 NM_168453.2 NP_001189083.1 NP_001246715.1 NP_001246716.1 NP_648454.1 NP_729690.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0302699	4818	1233aa	FBpp0291839	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	NM_001202154.1 NM_001259786.2 NM_001259787.1 NM_140197.3 NM_168453.2 NP_001189083.1 NP_001246715.1 NP_001246716.1 NP_648454.1 NP_729690.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0302696	4814	1233aa	FBpp0291836	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH2	NM_001202154.1 NM_001259786.2 NM_001259787.1 NM_140197.3 NM_168453.2 NP_001189083.1 NP_001246715.1 NP_001246716.1 NP_648454.1 NP_729690.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0330283	4814	1244aa	FBpp0303315	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF53	NM_001274777.1 NP_001261706.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0302698	4501	1301aa	FBpp0291838	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRS6	NM_001202153.1 NM_001202155.2 NP_001189082.1 NP_001189084.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0302700	4463	1301aa	FBpp0291840	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRS6	NM_001202153.1 NM_001202155.2 NP_001189082.1 NP_001189084.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2

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Summary

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Gene-based displays