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- Splice variants
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DB built by FlyBase

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Gene: CG42674 FBgn0261556

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Gene Synonyms

Location

Primary_assembly 3L: 20,149,614-20,198,317 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 7 transcripts (splice variants) and 12 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42674-RC	FBtr0302714	10270	1661aa	FBpp0291854	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VW85	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42674-RA	FBtr0302712	10165	1626aa	FBpp0291852	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z088	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42674-RB	FBtr0302713	9727	1480aa	FBpp0291853	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z087	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42674-RD	FBtr0302715	9513	1445aa	FBpp0291855	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z086	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42674-RE	FBtr0302716	7058	1412aa	FBpp0291856	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFQ9 Q8SWY9 Q95R62	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42674-RF	FBtr0332698	6949	1412aa	FBpp0304944	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFQ9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42674-RG	FBtr0332699	5003	848aa	FBpp0304945	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG56	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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