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DB built by FlyBase

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Gene: sdt FBgn0261873

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Description

stardust

Gene Synonyms

Location

Primary_assembly X: 8,178,549-8,240,474 forward strand.

BDGP6.54:AE014298.5

About this gene

This gene has 14 transcripts (splice variants), 72 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sdt-RG	FBtr0100376	8462	2020aa	FBpp0111740	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E2QD98 Q8WRS2 Q8WRS3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
sdt-RM	FBtr0333720	9152	1901aa	FBpp0305869	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJD0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RL	FBtr0308220	7745	1941aa	FBpp0300540	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEZ2 Q6IIJ2	-	-
sdt-RO	FBtr0340141	7220	1606aa	FBpp0309127	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JCZ1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RP	FBtr0340142	6968	1173aa	FBpp0309128	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IIJ2 Q6NP81 X2JIZ6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RB	FBtr0089978	6828	1292aa	FBpp0088916	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DMM6 Q8WRS3 Q9W3H6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RE	FBtr0089974	6490	1367aa	FBpp0088912	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVT3 Q8WRS2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RJ	FBtr0308218	6406	1527aa	FBpp0300538	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NG38	-	-
sdt-RN	FBtr0333721	5650	1292aa	FBpp0305870	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3H6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RI	FBtr0308217	5214	1269aa	FBpp0300537	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3LF67 D3DMM6 Q9W3H8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RF	FBtr0100375	4482	859aa	FBpp0099784	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NR03	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RH	FBtr0111034	4017	934aa	FBpp0110333	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KHU9 Q1EBX8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RD	FBtr0089975	3838	879aa	FBpp0088913	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NP43 Q9W3H7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sdt-RK	FBtr0308219	3790	879aa	FBpp0300539	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3H7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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