Summary
- Splice variants
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DB built by FlyBase

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Gene: CG43102 FBgn0262562

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Location

Primary_assembly 3R: 17,768,272-17,794,490 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 7 transcripts (splice variants) and 32 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG43102-RC	FBtr0305011	9700	2519aa	FBpp0293548	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6L3	NM_001260227 NM_001260227.2 NP_001247156 NP_001247156.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG43102-RF	FBtr0330032	9574	2468aa	FBpp0303065	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHP1	NM_001275755 NM_001275755.2 NP_001262684 NP_001262684.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43102-RB	FBtr0305010	9574	2448aa	FBpp0293547	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEF7	NM_001260226.2 NM_142397 NM_142397.3 NP_001247155.1 NP_650654 NP_650654.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43102-RA	FBtr0305009	9464	2448aa	FBpp0293546	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEF7	NM_001260226 NM_001260226.2 NM_142397.3 NP_001247155 NP_001247155.1 NP_650654.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43102-RG	FBtr0344631	8568	1875aa	FBpp0310948	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LIC0	NM_001300454 NM_001300454.1 NP_001287383 NP_001287383.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43102-RE	FBtr0305013	7161	1101aa	FBpp0293550	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEF9	NM_142396 NM_142396.3 NP_650653 NP_650653.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43102-RD	FBtr0305012	6854	1542aa	FBpp0293549	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K728	NM_001260228 NM_001260228.2 NP_001247157 NP_001247157.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays