Summary
- Splice variants
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DB built by FlyBase

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Gene: axo FBgn0262870

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Description

axotactin

Gene Synonyms

Location

Primary_assembly 3L: 4,629,604-4,687,317 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 376 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
axo-RG	FBtr0333592	7145	2179aa	FBpp0305769	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE65 Q9XYX0	NM_001259702.1 NM_001274494 NM_001274494.1 NP_001246631.1 NP_001261423 NP_001261423.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
axo-RF	FBtr0333591	7662	2147aa	FBpp0305768	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBP8 Q9XYX0	NM_001274493 NM_001274493.1 NP_001261422 NP_001261422.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
axo-RB	FBtr0302646	7556	2148aa	FBpp0291786	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFN0	NM_001259701 NM_001259701.1 NP_001246630 NP_001246630.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
axo-RI	FBtr0333594	7256	2047aa	FBpp0305771	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RVD1 Q9VZ96	NM_079917 NM_079917.5 NP_524656 NP_524656.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
axo-RC	FBtr0306206	7036	2179aa	FBpp0297315	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE65	NM_001259702 NM_001259702.1 NM_001274494.1 NP_001246631 NP_001246631.1 NP_001261423.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
axo-RH	FBtr0333593	6976	2070aa	FBpp0305770	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF15	NM_001259703.1 NM_001274495 NM_001274495.1 NP_001246632.1 NP_001261424 NP_001261424.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
axo-RD	FBtr0306207	6867	2070aa	FBpp0297316	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF15	NM_001259703 NM_001259703.1 NM_001274495.1 NP_001246632 NP_001246632.1 NP_001261424.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays