Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Metazoan Compara
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DB built by FlyBase

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Gene: sqd FBgn0263396

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Description

squid

Location

Primary_assembly 3R: 13,634,862-13,646,304 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 173 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sqd-RA	FBtr0082854	5551	321aa	FBpp0082319	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_169529 NM_169529.3 NP_731826 NP_731826.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
sqd-RE	FBtr0309094	2844	308aa	FBpp0301102	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6U6	NM_001260159 NM_001260159.2 NM_143952.2 NP_001247088 NP_001247088.1 NP_652209.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
sqd-RC	FBtr0082856	2239	308aa	FBpp0082321	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6U6	NM_001260159.2 NM_143952 NM_143952.2 NP_001247088.1 NP_652209 NP_652209.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
sqd-RB	FBtr0082855	2115	344aa	FBpp0082320	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08473	NM_001260159.2 NM_143952.2 NM_169528 NM_169528.2 NM_169529.3 NM_206481.2 NP_001247088.1 NP_652209.1 NP_731825 NP_731825.1 NP_731826.1 NP_996203.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
sqd-RD	FBtr0082857	1983	178aa	FBpp0089309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_206481 NM_206481.2 NP_996203 NP_996203.1

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Summary

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Gene-based displays