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- Splice variants
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DB built by FlyBase

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Gene: sqd FBgn0263396

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Description

squid

Gene Synonyms

Location

Primary_assembly 3R: 13,634,862-13,646,304 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 182 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sqd-RB	FBtr0082855	2115	344aa	FBpp0082320	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08473	NM_001260159.2 NM_143952.2 NM_169528 NM_169528.2 NM_169529.3 NM_206481.2 NP_001247088.1 NP_652209.1 NP_731825 NP_731825.1 NP_731826.1 NP_996203.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
sqd-RA	FBtr0082854	5551	321aa	FBpp0082319	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_169529 NM_169529.3 NP_731826 NP_731826.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sqd-RE	FBtr0309094	2844	308aa	FBpp0301102	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6U6	NM_001260159 NM_001260159.2 NM_143952.2 NP_001247088 NP_001247088.1 NP_652209.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sqd-RC	FBtr0082856	2239	308aa	FBpp0082321	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6U6	NM_001260159.2 NM_143952 NM_143952.2 NP_001247088.1 NP_652209 NP_652209.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sqd-RD	FBtr0082857	1983	178aa	FBpp0089309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_206481 NM_206481.2 NP_996203 NP_996203.1	-

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Summary

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Gene-based displays