Pcf11 cleavage and polyadenylation factor subunit
Primary_assembly 2R: 14,860,936-14,871,071 reverse strand.
BDGP6.32:AE013599.5
This gene has 7 transcripts (splice variants) and 137 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Pcf11-RD | FBtr0302294 | 6321 | 1953aa | FBpp0291500 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A1Z9W4 | NM_137155 NM_137155.5 NP_610999 NP_610999.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Pcf11-RG | FBtr0339986 | 6297 | 1945aa | FBpp0309007 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LFE6 | NM_001299500 NM_001299500.1 NP_001286429 NP_001286429.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pcf11-RH | FBtr0345528 | 6199 | 1839aa | FBpp0311632 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LFF9 | NM_001202002.2 NM_001299501 NM_001299501.1 NP_001188931.1 NP_001286430 NP_001286430.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pcf11-RF | FBtr0339985 | 6012 | 1850aa | FBpp0309006 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LF47 | NM_001299499 NM_001299499.1 NP_001286428 NP_001286428.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pcf11-RE | FBtr0302560 | 5979 | 1839aa | FBpp0291716 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LFF9 C7LA61 | NM_001202002 NM_001202002.2 NM_001299501.1 NP_001188931 NP_001188931.1 NP_001286430.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Pcf11-RB | FBtr0301513 | 2647 | 573aa | FBpp0290728 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JH68 Q8IGR2 | NM_001169682 NM_001169682.2 NP_001163153 NP_001163153.1 | - |
| Pcf11-RC | FBtr0302109 | 819 | 86aa | FBpp0291319 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0P8M6 | NM_001169683 NM_001169683.2 NP_001163154 NP_001163154.1 | - |
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