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DB built by FlyBase

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Gene: l(3)neo38 FBgn0265276

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Description

lethal (3) neo38

Gene Synonyms

Location

Primary_assembly 3R: 11,765,038-11,779,128 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 10 transcripts (splice variants), 134 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
l(3)neo38-RL	FBtr0330170	2247	455aa	FBpp0303203	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGA3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
l(3)neo38-RB	FBtr0110876	6236	447aa	FBpp0110176	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSP5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
l(3)neo38-RD	FBtr0305186	4963	434aa	FBpp0293716	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E0R905	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
l(3)neo38-RG	FBtr0307083	3815	360aa	FBpp0297926	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6S1	-	-
l(3)neo38-RJ	FBtr0307086	3691	360aa	FBpp0297929	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6S1	-	-
l(3)neo38-RC	FBtr0110877	2247	447aa	FBpp0110177	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSP5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
l(3)neo38-RK	FBtr0307087	1611	447aa	FBpp0297930	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSP5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
l(3)neo38-RA	FBtr0082533	1522	380aa	FBpp0082007	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SZN9	-	-
l(3)neo38-RF	FBtr0307082	1417	373aa	FBpp0297925	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6F4	-	-
l(3)neo38-RI	FBtr0307085	1414	373aa	FBpp0297928	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6F4	-	-

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Summary

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