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DB built by FlyBase

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Gene: chp FBgn0267435

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Description

chaoptin

Gene Synonyms

Location

Primary_assembly 3R: 31,204,180-31,210,730 reverse strand.

BDGP6.54:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 35 orthologues and 34 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
chp-RD	FBtr0330101	4863	1338aa	FBpp0303134	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHX5 E3CTS9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
chp-RA	FBtr0085778	4872	1315aa	FBpp0085139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAG8 P12024	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
chp-RF	FBtr0335411	4863	1312aa	FBpp0307394	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHK5 F0JAL7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
chp-RE	FBtr0335410	4851	1308aa	FBpp0307393	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KI35	-	-
chp-RC	FBtr0330100	4842	1305aa	FBpp0303133	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHG5 B7FNR3 E3CTQ1	-	-

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Summary

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