Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: LIMK1 FBgn0283712

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Description

LIM domain kinase 1

Gene Synonyms

Location

Primary_assembly X: 12,584,385-12,592,193 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 159 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
LIMK1-RC	FBtr0073660	5627	1257aa	FBpp0073493	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A650FA03 A0A650FA15 A0A650FBE4 Q8IR79	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
LIMK1-RA	FBtr0073659	4964	1235aa	FBpp0073492	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A650FA57 A0A650FA81 E1JJM7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
LIMK1-RD	FBtr0073661	4814	1052aa	FBpp0073494	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A650FA25 A0A650FA38 C7LAB4 H5V8E7	-	-
LIMK1-RE	FBtr0301830	4520	1235aa	FBpp0291044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJM7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
LIMK1-RF	FBtr0301831	4187	1043aa	FBpp0291045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A650FA28 A0A650FA37 E1JJM8	-	-

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Summary

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