Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG46339 FBgn0285963

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Location

Primary_assembly 3R: 26,915,761-26,945,309 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 42 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG46339-RD	FBtr0472698	5182	1194aa	FBpp0422661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH77	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RB	FBtr0472696	5146	1182aa	FBpp0422659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRD7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RF	FBtr0472700	5050	1182aa	FBpp0422663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRD7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RC	FBtr0472697	4849	1083aa	FBpp0422660	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7L8 Q7KML3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG46339-RA	FBtr0472695	4813	1071aa	FBpp0422658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBA3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RE	FBtr0472699	4717	1071aa	FBpp0422662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBA3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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