Summary
- Splice variants
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DB built by FlyBase

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Gene: CG46339 FBgn0285963

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Gene Synonyms

Location

Primary_assembly 3R: 26,915,761-26,945,309 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 98 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG46339-RD	FBtr0472698	5182	1194aa	FBpp0422661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH77 Q7KML3	NM_001276072 NM_001276072.1 NP_001263001.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG46339-RB	FBtr0472696	5146	1182aa	FBpp0422659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRD7	NM_001104469 NM_001104469.3 NP_001097939.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RF	FBtr0472700	5050	1182aa	FBpp0422663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRD7	NM_001104469.3 NM_001363936 NP_001097939.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RC	FBtr0472697	4849	1083aa	FBpp0422660	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7L8	NM_001260394 NM_001260394.2 NP_001247323.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RA	FBtr0472695	4813	1071aa	FBpp0422658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBA3	NM_144487 NM_144487.3 NP_652744.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46339-RE	FBtr0472699	4717	1071aa	FBpp0422662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBA3	NM_001363935 NM_144487.3 NP_652744.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays