Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: stw FBgn0286203

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Description

straw

Gene Synonyms

Location

Primary_assembly 2R: 5,413,744-5,456,095 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 133 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
stw-RE	FBtr0299921	3645	784aa	FBpp0289199	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z6F4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
stw-RG	FBtr0335262	3645	784aa	FBpp0307245	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF30	-	-
stw-RA	FBtr0299918	3561	784aa	FBpp0289196	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQF6 Q86P50	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
stw-RF	FBtr0301063	2869	749aa	FBpp0290285	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z6F6 Q500X6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
stw-RD	FBtr0299920	2706	784aa	FBpp0289198	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZT1	-	-

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Summary

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