Heliconius melpomene (Hmel1)

Heliconius melpomene Assembly and Gene Annotation

About Heliconius melpomene

Within the butterflies, the combined traits of daytime flight and colour-vision have led to the evolution of complex colour patterns for both within- and between-species signalling. As long ago as 1862, Henry W. Bates, reflecting upon observations made during his stay in the Amazon basin, had shown that colour patterns for butterflies of the genus Heliconius were similar between species within any one area. Furthermore, the specific patterns of such Mullerian mimickry, whereby species share the cost of educating predators about their unpalatable nature, changes every 100-200 miles. Such characteristics provide exciting opportunities for genomic studies into the nature of adaptive variation, the origin of new species, and the genetic basis of complex traits. The Postman Butterfly, Heliconius melpomene, has large long wings with a red stripe down each forewing. It is poisonous, and has a geographical distribution from Central to South America. It is the first of the Heliconius butterflies to have its genome sequenced.

Picture credit: Mauricio Linares, via Chris Jiggins (University of Cambridge)

Assembly

The sequencing was done at the Baylor College of Medicine, Houston, Texas, to a depth of 22x coverage with 454 technology and 16x coverage with Illumina. Assembly and scaffolding were performed with CABOG. Assembly of scaffolds into chromosomal linkage groups was carried out using a RAD sequence library. The final assembly, Hmel1, has 4,309 scaffolds with a scaffold N50 of 196 kb, representing 270 Mb. In total, 1,745 scaffolds were placed on chromosomes, covering 218 Mb (81%) of the genome. The data in Ensembl Genomes is a direct import of Hmel v1.1 from the Heliconius Genome Consortium, imported in March 2012, supplemented with additional cross-references and protein annotations.

Annotation

Genes were predicted for H. melpomene using the MAKER pipeline with Cufflinks assembled RNASeq data. Gene annotation v1.1 contains 12,669 protein coding genes.

Other Alignments

Approximately 130 community annotations are mapped to the genome (Example: HE671626:144000-177000).

Links

References

  1. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species.
    The Heliconius Genome Consortium. 2012. Nature. 487:94-98.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyHmel1, INSDC Assembly GCA_000313835.1, Feb 2012
Database version98.1
Base Pairs269,658,870
Golden Path Length273,786,188
Genebuild byHGC
Genebuild methodGenerated using MAKER
Data sourceHeliconius Genome Consortium

Gene counts

Coding genes12,669
Non coding genes4,408
Small non coding genes4,407
Long non coding genes1
Pseudogenes968
Gene transcripts18,205

About this species