Rhipicephalus sanguineus (Brown dog tick, Rsan-2018) Assembly and Gene Annotation
About Rhipicephalus sanguineus
Rhipicephalus sanguineus, commonly called the brown dog tick, kennel tick, or pantropical dog tick, is a species of tick found worldwide, but more commonly in warmer climates. This species is unusual among ticks in that its entire lifecycle can be completed indoors.
Rhipicephalus sanguineus is one of the most important vectors of diseases in dogs worldwide
(Text from Wikipedia, the free encyclopedia [1].)
Assembly
The assembly presented is the GCA013339695v1 assembly submitted[2,3] to INSDC with the assembly accession GCA_013339695.1.
Annotation
Ensembl Metazoa displays the genes from NCBI Rhipicephalus sanguineus Annotation Release 100. Small RNA features, protein features and cross-references have been annotated by Ensembl Metazoa.
The original TIGMIC Group[2,3] annotation added as a separate "CNCB-NGDC annotation" track.
References
Rhipicephalus sanguineus, (accessed January 11, 2022). Wikipedia contributors, Wikipedia, The Free Encyclopedia.
TIGMIC Group, Beijing Institute of Microbiology and Epidemiology
Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Jia N, Wang J, Shi W, et al. . Cell. 2020 Sep;182(5):1328-1340.e13. DOI: 10.1016/j.cell.2020.07.023. PMID: 32814014.
Statistics
Summary
Assembly | ASM1333969v1, INSDC Assembly GCA_013339695.1, |
Database version | 111.1 |
Golden Path Length | 2,365,540,030 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | TIGMIC Group, Beijing Institute of Microbiology and Epidemiology |
Gene counts
Coding genes | 23,522 |
Non coding genes | 10,839 |
Small non coding genes | 5,205 |
Long non coding genes | 5,634 |
Pseudogenes | 1,390 |
Gene transcripts | 45,849 |