Anopheles gambiae vs Anopheles albimanus Synteny results

The syntenic regions between Anopheles gambiae (Anopheles gambiae, AgamP4) and Anopheles albimanus (Anopheles albimanus, AalbS2) were extracted from their pairwise alignment in Ensembl Metazoa release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 345 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Anopheles gambiae

Uncovered: 103,921,124 out of 281,378,673
Covered: 177,457,549 out of 281,378,673

Uncovered: 6,485,512 out of 22,369,942
Covered: 15,884,430 out of 22,369,942

Anopheles albimanus

Uncovered: 25,826,501 out of 173,339,240
Covered: 147,512,739 out of 173,339,240

Uncovered: 3,634,025 out of 20,938,803
Covered: 17,304,778 out of 20,938,803