Anopheles gambiae vs Anopheles funestus Synteny results

The syntenic regions between Anopheles gambiae (Anopheles gambiae, AgamP4) and Anopheles funestus (Anopheles funestus, AfunF3) were extracted from their pairwise alignment in Ensembl Metazoa release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 153 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Anopheles gambiae

Uncovered: 76,695,085 out of 281,378,673
Covered: 204,683,588 out of 281,378,673

Uncovered: 2,344,487 out of 22,369,942
Covered: 20,025,455 out of 22,369,942

Anopheles funestus

Uncovered: 22,255,002 out of 210,989,154
Covered: 188,734,152 out of 210,989,154

Uncovered: 1,453,454 out of 22,083,846
Covered: 20,630,392 out of 22,083,846