Anopheles gambiae vs Anopheles atroparvus Synteny results

The syntenic regions between Anopheles gambiae (Anopheles gambiae, AgamP4) and Anopheles atroparvus (Anopheles atroparvus, AatrE3) were extracted from their pairwise alignment in Ensembl Metazoa release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 241 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Anopheles gambiae

Uncovered: 96,647,804 out of 281,378,673
Covered: 184,730,869 out of 281,378,673

Uncovered: 5,019,546 out of 22,369,942
Covered: 17,350,396 out of 22,369,942

Anopheles atroparvus

Uncovered: 47,906,232 out of 225,295,225
Covered: 177,388,993 out of 225,295,225

Uncovered: 3,735,548 out of 20,693,284
Covered: 16,957,736 out of 20,693,284