Anopheles gambiae vs Aedes aegypti (LVP_AGWG) Synteny results

The syntenic regions between Anopheles gambiae (Anopheles gambiae, AgamP4) and Aedes aegypti (LVP_AGWG) (Aedes aegypti, AaegL5) were extracted from their pairwise alignment in Ensembl Metazoa release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 170 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Anopheles gambiae

Uncovered: 243,083,351 out of 281,378,673
Covered: 38,295,322 out of 281,378,673

Uncovered: 19,865,789 out of 22,369,942
Covered: 2,504,153 out of 22,369,942

Aedes aegypti (LVP_AGWG)

Uncovered: 1,127,014,353 out of 1,278,732,104
Covered: 151,717,751 out of 1,278,732,104

Uncovered: 21,767,732 out of 24,304,798
Covered: 2,537,066 out of 24,304,798