Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Thelohanellus kitauei
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Nematostella vectensis
-------
Caenorhabditis briggsae
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Caenorhabditis japonica
-------
-
Caenorhabditis brenneri
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----
Caenorhabditis remanei
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Caenorhabditis elegans
--------------
Strongyloides ratti
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----
Brugia malayi
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-
Loa loa
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Onchocerca volvulus
---------------------
Pristionchus pacificus
----------------------
Trichinella spiralis
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-
Tetranychus urticae
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----
Sarcoptes scabiei
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--------
Ixodes scapularis
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Stegodyphus mimosarum
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-
Lepeophtheirus salmonis
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Daphnia pulex
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-
Acyrthosiphon pisum
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Rhodnius prolixus
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Pediculus humanus corporis
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-
Bombus impatiens
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Apis mellifera
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-
Atta cephalotes
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Solenopsis invicta
---------------------------------
Nasonia vitripennis
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Heliconius melpomene
----------
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-
Melitaea cinxia
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Danaus plexippus
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Bombyx mori
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-
Aedes aegypti
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Culex quinquefasciatus
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-
Anopheles gambiae
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Anopheles darlingi
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Belgica antarctica
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Mayetiola destructor
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-
Drosophila mojavensis
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Drosophila virilis
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-
Drosophila persimilis
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Drosophila pseudoobscura pseudoobscura
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Drosophila yakuba
----------------------------
-------
Drosophila erecta
-------------------------------
----
-
Drosophila simulans
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Drosophila melanogaster
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Drosophila sechellia
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Drosophila ananassae
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Drosophila willistoni
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Drosophila grimshawi
-
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Lucilia cuprina
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Megaselia scalaris
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Dendroctonus ponderosae
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-
Tribolium castaneum
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Anoplophora glabripennis
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Zootermopsis nevadensis
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Strigamia maritima
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-
Capitella teleta
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Helobdella robusta
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Lottia gigantea
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-
-
Crassostrea gigas
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Octopus bimaculoides
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Adineta vaga
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Lingula anatina
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Schistosoma mansoni
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Strongylocentrotus purpuratus
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Mnemiopsis leidyi
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Amphimedon queenslandica
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Trichoplax adhaerens