Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Nematostella vectensis
-------
Thelohanellus kitauei
---------------------------------------
-
Daphnia pulex
----------
Lepeophtheirus salmonis
----------
-
Acyrthosiphon pisum
----------------------------------
----
Rhodnius prolixus
-----------------
Pediculus humanus corporis
---------------------
-
Drosophila virilis
----------------
Drosophila mojavensis
--------------------
-
Drosophila pseudoobscura pseudoobscura
-------------------
Drosophila persimilis
-------------------
Drosophila simulans
-------
-------
-------
Drosophila erecta
-------------------
----
-
Drosophila sechellia
----------------------
----
Drosophila yakuba
----------------
-------------
Drosophila melanogaster
--------------------------------
Drosophila ananassae
----------------
------------------
Drosophila willistoni
-------------------------------------
Drosophila grimshawi
--------------------------------------
Lucilia cuprina
----------------
------------------------
Megaselia scalaris
----------------------
-
Aedes aegypti
----------
----------
----
Culex quinquefasciatus
-------------------
----
-
Anopheles darlingi
------------------------
-------
Anopheles gambiae
---------------------------
Belgica antarctica
-------
----------------------
Mayetiola destructor
-------------------
Heliconius melpomene
-------------
----
-
Danaus plexippus
------------------------------------
----
Melitaea cinxia
-----------------------
Bombyx mori
-------------------
-
Solenopsis invicta
----
----------------
----
Atta cephalotes
-----------------------------------
----
-
Apis mellifera
----------
----------------
Bombus impatiens
---------------------------------
Nasonia vitripennis
-------------------------
Dendroctonus ponderosae
----------------------------------------------
-
Tribolium castaneum
----------------------
Anoplophora glabripennis
---------------------------------------------------
Zootermopsis nevadensis
--------------------------------------------------------
Strigamia maritima
----------------
-
Tetranychus urticae
----------------
----
Sarcoptes scabiei
----------
------------------------------------
--------
Ixodes scapularis
------------------------
Stegodyphus mimosarum
----------------
Caenorhabditis briggsae
----------------
Caenorhabditis elegans
----------------
-
Caenorhabditis remanei
----------------
----
Caenorhabditis brenneri
-
-------------------
Caenorhabditis japonica
-----------------------
Strongyloides ratti
----------
-------
----
Brugia malayi
--------------------------
-
Loa loa
------------------------------------------------
-------
Onchocerca volvulus
---------------------------
Pristionchus pacificus
----------------------------
Trichinella spiralis
----------------
-
Helobdella robusta
-------
----------
Capitella teleta
-------------------
Crassostrea gigas
---------------------------------------------------------
-
-
Octopus bimaculoides
----------------
Lottia gigantea
-----------------
Lingula anatina
-----------------
Adineta vaga
------------------------------------------------------------------
Strongylocentrotus purpuratus
------------------------------------------------------------------
Schistosoma mansoni
-------------------------------------------------------------------
Mnemiopsis leidyi
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Trichoplax adhaerens
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Amphimedon queenslandica