Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
------------------------------------------------------------
-
Nematostella vectensis
-------
Thelohanellus kitauei
-------
Caenorhabditis remanei
-------
Caenorhabditis elegans
-------
-
Caenorhabditis japonica
-------
----
Caenorhabditis briggsae
-------------
Caenorhabditis brenneri
--------------
Strongyloides ratti
-------
----
Onchocerca volvulus
--------------
-
Loa loa
---------------------------------------
-------
Brugia malayi
---------------------
Pristionchus pacificus
----------------------
Trichinella spiralis
----------
-
Tetranychus urticae
----------
----
Sarcoptes scabiei
------------------------------------------
--------
Ixodes scapularis
---------------------
Stegodyphus mimosarum
---------------------------------------------
-
Daphnia pulex
----------------
Lepeophtheirus salmonis
-------
----------
-
Acyrthosiphon pisum
-------------------------------------------
----
Rhodnius prolixus
--------------------------
Pediculus humanus corporis
------------------------------
-
Drosophila virilis
-------------------------
Drosophila mojavensis
-----------------------------
-
Drosophila pseudoobscura pseudoobscura
----------------------------
Drosophila persimilis
----------------------------
Drosophila melanogaster
----------------
-------
-------
Drosophila erecta
----------
----------------
----
-
Drosophila yakuba
----------------------------
----
Drosophila sechellia
----------------------
-------------
Drosophila simulans
--------------------------------------
Drosophila ananassae
----
-------------------
------------------
Drosophila willistoni
----------------------------------------------
Drosophila grimshawi
-----------------------------------------------
Lucilia cuprina
-------------------------
------------------------
Megaselia scalaris
-------------------------------
-
Anopheles darlingi
-------------------
----------
----
Anopheles gambiae
----------------------------
----
-
Culex quinquefasciatus
----------
------------------------
-------
Aedes aegypti
---------------------------------------
Belgica antarctica
----------------
----------------------
Mayetiola destructor
-------------------------
Melitaea cinxia
-------------------
----
-
Danaus plexippus
------------------------------------------
----
Heliconius melpomene
-----------------------------
Bombyx mori
-------------------------
-
Bombus impatiens
-------------------------
----
Apis mellifera
--------------------------------------
----
-
Atta cephalotes
-
-------------------------
Solenopsis invicta
---------------------------------
Nasonia vitripennis
-------
----------------
Anoplophora glabripennis
----------------------------------------------
-
Dendroctonus ponderosae
----------------------
Tribolium castaneum
---------------------------------------------------
Zootermopsis nevadensis
--------------------------------------------------------
Strigamia maritima
----------------
-
Helobdella robusta
-------------------
Capitella teleta
-------------------
Crassostrea gigas
---------------------------------------------------------
-
-
Lottia gigantea
----------------
Octopus bimaculoides
-----------------
Lingula anatina
-----------------
Adineta vaga
------------------------------------------------------------------
Strongylocentrotus purpuratus
------------------------------------------------------------------
Schistosoma mansoni
-------------------------------------------------------------------
Mnemiopsis leidyi
--------------------------------------------------------------------
Amphimedon queenslandica
--------------------------------------------------------------------
Trichoplax adhaerens