Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Nematostella vectensis (Nematostella vectensis CH2 x CH6)
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Thelohanellus kitauei (Thelohanellus kitauei)
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Caenorhabditis remanei (Caenorhabditis remanei)
-------
Caenorhabditis briggsae (Caenorhabditis briggsae)
-------
-
Caenorhabditis brenneri (Caenorhabditis brenneri)
-------
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Caenorhabditis japonica (Caenorhabditis japonica)
-------------
Caenorhabditis elegans (Caenorhabditis elegans)
--------------
Pristionchus pacificus (Pristionchus pacificus)
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Onchocerca volvulus (Onchocerca volvulus O. volvulus Cameroon isolate)
--------------
-
Loa loa (Loa loa Cameroon SouthWest Province isolate)
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Brugia malayi (Brugia malayi)
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Strongyloides ratti (Strongyloides ratti)
----------------------
Trichinella spiralis (Trichinella spiralis)
----------
-
Daphnia pulex (Daphnia pulex)
--------------------------------------------------
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Daphnia magna (Daphnia magna)
-----------------
Lepeophtheirus salmonis (Lepeophtheirus salmonis)
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-
Folsomia candida str. VU population (Folsomia candida)
----------------
Orchesella cincta (Orchesella cincta)
----------------
-
Cimex lectularius (Cimex lectularius)
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Rhodnius prolixus (Rhodnius prolixus)
--------------------------------------------
--------
Acyrthosiphon pisum (Acyrthosiphon pisum)
---------------------------
Pediculus humanus (Pediculus humanus corporis)
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Melitaea cinxia (Melitaea cinxia)
-------------------
-
Heliconius melpomene (Heliconius melpomene)
----------
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----
Danaus plexippus (Danaus plexippus)
-----------------------------
Bombyx mori (Bombyx mori)
---------------------------------
-
Drosophila mojavensis (Drosophila mojavensis)
----------------------------
Drosophila virilis (Drosophila virilis)
----------------------------
Drosophila sechellia (Drosophila sechellia)
----------------------------
Drosophila simulans (Drosophila simulans)
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-
Drosophila yakuba (Drosophila yakuba)
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----
----
Drosophila erecta (Drosophila erecta)
-------------------------------------
Drosophila melanogaster (Drosophila melanogaster)
----------------------------
--------
Drosophila ananassae (Drosophila ananassae)
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----------
-----------
-
Drosophila persimilis (Drosophila persimilis)
----------------------------------
Drosophila pseudoobscura (Drosophila pseudoobscura pseudoobscura)
---------------------------------------
Drosophila willistoni (Drosophila willistoni)
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Drosophila grimshawi (Drosophila grimshawi)
----------------------
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Teleopsis dalmanni (Teleopsis dalmanni)
--------------------------------
-
Stomoxys calcitrans (Stomoxys calcitrans)
-------------------------------
Musca domestica (Musca domestica)
-------------------------------
-
Glossina palpalis (Glossina palpalis gambiensis)
-------
----------------------------
Glossina fuscipes fuscipes (Glossina fuscipes fuscipes)
-----------------------------
------------
-
----
Glossina morsitans (Glossina morsitans morsitans)
----------------------------------
-
Glossina pallidipes (Glossina pallidipes)
-------------------------------------
Glossina austeni (Glossina austeni)
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Glossina brevipalpis (Glossina brevipalpis)
---------------------------------------
Lucilia cuprina (Lucilia cuprina)
----------------------------------------------------
Megaselia scalaris (Megaselia scalaris)
------------------------------------------------
-
Culicoides sonorensis (Culicoides sonorensis)
-------------------------------
Belgica antarctica (Belgica antarctica)
-------------------------------
-
Aedes aegypti (LVP_AGWG) (Aedes aegypti)
----------------------------
----------------
----
Aedes albopictus (Aedes albopictus)
----------------
----
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Culex quinquefasciatus (Culex quinquefasciatus)
----
-------------
----------------------------
-
Anopheles albimanus (Anopheles albimanus)
----------------------------------------
Anopheles darlingi (Anopheles darlingi)
----------------
----------------
-------
-
Anopheles sinensis (China) (Anopheles sinensis)
---------------------------------------------
----
Anopheles sinensis (Anopheles sinensis)
--------------------------------------------
Anopheles atroparvus (Anopheles atroparvus)
------------------------------------------------
-
Anopheles farauti (Anopheles farauti)
----------------------------------
-------
Anopheles dirus (Anopheles dirus)
----------------------------------------
-
Anopheles coluzzii (Ngousso) (Anopheles coluzzii)
-------------------------------------------
Anopheles coluzzii (Anopheles coluzzii)
--------------------------------------------
Anopheles quadriannulatus (Anopheles quadriannulatus)
----------------------------
----------
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Anopheles merus (Anopheles merus)
--------------------------------------------
Anopheles arabiensis (Anopheles arabiensis)
-------------------------------
-
--------
Anopheles gambiae (Anopheles gambiae)
-----------------------------------------
Anopheles melas (Anopheles melas)
------------------------------------------
Anopheles epiroticus (Anopheles epiroticus)
----------------------------------
-
Anopheles stephensi (Anopheles stephensi)
----------
--------------------------
----
Anopheles stephensi (Indian) (Anopheles stephensi)
-----------------------------------------
Anopheles maculatus (Anopheles maculatus)
-------------------------------------
Anopheles minimus (Anopheles minimus)
------------------------------------------
-
Anopheles culicifacies (Anopheles culicifacies)
----------------
----------------
Anopheles funestus (Anopheles funestus)
----------------------------------------------------
-
Lutzomyia longipalpis (Lutzomyia longipalpis)
-------------------------------
Phlebotomus papatasi (Phlebotomus papatasi)
--------------------------------------------------------
Mayetiola destructor (Mayetiola destructor Kansas Great Plain)
--------------------------------
-
Atta cephalotes (Atta cephalotes)
----------------------------
----
Solenopsis invicta (Solenopsis invicta)
----------------------------------
-
Bombus terrestris (Bombus terrestris)
---------------------------------------------
----
----
Bombus impatiens (Bombus impatiens)
-
--------------------------------
Apis mellifera (Apis mellifera)
----------------------------------------
Nasonia vitripennis (Nasonia vitripennis)
----------------------------
Dendroctonus ponderosae (Dendroctonus ponderosae)
---------------------------------------------------------
-
Tribolium castaneum (Tribolium castaneum Georgia GA2)
-------------------------
Anoplophora glabripennis (Anoplophora glabripennis)
--------------------------------------------------------------
Zootermopsis nevadensis (Zootermopsis nevadensis)
-------
--------------------------------------------------------------
Strigamia maritima (Strigamia maritima)
---------------------------
-
Ixodes scapularis (ISE6) (Ixodes scapularis)
----------------------
Ixodes scapularis (Ixodes scapularis)
-------------------
----
-
Leptotrombidium deliense (Leptotrombidium deliense)
-------------------------
----
Dinothrombium tinctorium (Dinothrombium tinctorium)
----------------------------------------------------
----
--------
Tetranychus urticae (Tetranychus urticae)
---------------------------
Sarcoptes scabiei (Sarcoptes scabiei)
--------------------------------
Stegodyphus mimosarum (Stegodyphus mimosarum)
--------------------
-
Helobdella robusta (Helobdella robusta)
-------------------
Capitella teleta (Capitella teleta)
-------------------
-
Biomphalaria glabrata (Biomphalaria glabrata)
-----------------------------------------------------------------
-
----
Lottia gigantea (Lottia gigantea)
--------------------
Octopus bimaculoides (Octopus bimaculoides)
--------------------
Crassostrea gigas (Crassostrea gigas)
---------------------
Adineta vaga (Adineta vaga)
---------------------
Lingula anatina (Lingula anatina)
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-
Strongylocentrotus purpuratus (Strongylocentrotus purpuratus)
-------------
Branchiostoma lanceolatum (Branchiostoma lanceolatum)
------------------------------------------------------------------------------
Hofstenia miamia (Hofstenia miamia)
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Schistosoma mansoni (Schistosoma mansoni)
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Mnemiopsis leidyi (Mnemiopsis leidyi)
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Amphimedon queenslandica (Amphimedon queenslandica)
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Trichoplax adhaerens (Trichoplax adhaerens)