Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Nematostella vectensis (Nematostella vectensis CH2 x CH6)
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Thelohanellus kitauei (Thelohanellus kitauei)
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Caenorhabditis japonica (Caenorhabditis japonica)
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Caenorhabditis elegans (Caenorhabditis elegans N2)
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Caenorhabditis remanei (Caenorhabditis remanei)
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Caenorhabditis brenneri (Caenorhabditis brenneri)
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Caenorhabditis briggsae (Caenorhabditis briggsae)
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Strongyloides ratti (Strongyloides ratti)
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Onchocerca volvulus (Onchocerca volvulus O. volvulus Cameroon isolate)
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Brugia malayi (Brugia malayi FR3)
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Loa loa (Loa loa Cameroon SouthWest Province isolate)
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Pristionchus pacificus (Pristionchus pacificus PS312)
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Trichinella spiralis (Trichinella spiralis ISS_195)
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Sarcoptes scabiei (Sarcoptes scabiei Arlian)
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Tetranychus urticae (Tetranychus urticae)
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Ixodes scapularis (Ixodes scapularis Wikel)
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Stegodyphus mimosarum (Stegodyphus mimosarum)
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Daphnia pulex (Daphnia pulex)
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Lepeophtheirus salmonis (Lepeophtheirus salmonis)
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Rhodnius prolixus (Rhodnius prolixus CDC)
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Acyrthosiphon pisum (Acyrthosiphon pisum)
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Pediculus humanus (Pediculus humanus corporis USDA)
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Atta cephalotes (Atta cephalotes)
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Solenopsis invicta (Solenopsis invicta)
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Bombus impatiens (Bombus impatiens)
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Bombus terrestris (Bombus terrestris)
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Apis mellifera (Apis mellifera DH4)
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Nasonia vitripennis (Nasonia vitripennis)
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Heliconius melpomene (Heliconius melpomene)
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Melitaea cinxia (Melitaea cinxia)
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Danaus plexippus (Danaus plexippus)
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Bombyx mori (Bombyx mori)
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Drosophila virilis (Drosophila virilis TSC#15010-1051.87)
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Drosophila mojavensis (Drosophila mojavensis TSC#15081-1352.22)
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Drosophila sechellia (Drosophila sechellia Rob3c)
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Drosophila erecta (Drosophila erecta TSC#14021-0224.01)
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Drosophila melanogaster (Drosophila melanogaster)
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Drosophila yakuba (Drosophila yakuba Tai18E2)
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Drosophila simulans (Drosophila simulans)
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Drosophila ananassae (Drosophila ananassae TSC#14024-0371.13)
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Drosophila persimilis (Drosophila persimilis MSH-3)
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Drosophila pseudoobscura (Drosophila pseudoobscura pseudoobscura MV2-25)
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Drosophila willistoni (Drosophila willistoni TSC#14030-0811.24)
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Drosophila grimshawi (Drosophila grimshawi TSC#15287-2541.00)
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Lucilia cuprina (Lucilia cuprina LS)
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Megaselia scalaris (Megaselia scalaris)
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Anopheles darlingi (Anopheles darlingi Coari)
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Anopheles gambiae (Anopheles gambiae PEST)
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Aedes aegypti (Aedes aegypti Liverpool)
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Culex quinquefasciatus (Culex quinquefasciatus Johannesburg)
-
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Belgica antarctica (Belgica antarctica)
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Mayetiola destructor (Mayetiola destructor Kansas Great Plain)
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Dendroctonus ponderosae (Dendroctonus ponderosae)
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Anoplophora glabripennis (Anoplophora glabripennis)
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Tribolium castaneum (Tribolium castaneum Georgia GA2)
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Zootermopsis nevadensis (Zootermopsis nevadensis)
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Strigamia maritima (Strigamia maritima)
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Helobdella robusta (Helobdella robusta)
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Capitella teleta (Capitella teleta)
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Crassostrea gigas (Crassostrea gigas)
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Octopus bimaculoides (Octopus bimaculoides)
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Lottia gigantea (Lottia gigantea)
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Adineta vaga (Adineta vaga)
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Lingula anatina (Lingula anatina)
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Schistosoma mansoni (Schistosoma mansoni)
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Strongylocentrotus purpuratus (Strongylocentrotus purpuratus)
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Mnemiopsis leidyi (Mnemiopsis leidyi)
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Trichoplax adhaerens (Trichoplax adhaerens Grell-BS-1999)
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Amphimedon queenslandica (Amphimedon queenslandica)