Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Thelohanellus kitauei
-------
Nematostella vectensis
-------
Caenorhabditis brenneri
-------
Caenorhabditis briggsae
-------
-
Caenorhabditis remanei
-------
----
Caenorhabditis japonica
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Caenorhabditis elegans
--------------
Strongyloides ratti
-------
----
Brugia malayi
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-
Loa loa
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-------
Onchocerca volvulus
---------------------
Pristionchus pacificus
----------------------
Trichinella spiralis
------------------------------------------
-
Lepeophtheirus salmonis
-------------
Daphnia pulex
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-
Acyrthosiphon pisum
-------------------------------------
----
Rhodnius prolixus
--------------------
Pediculus humanus corporis
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Heliconius melpomene
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-
Danaus plexippus
------------------------------------
----
Melitaea cinxia
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Bombyx mori
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-
Apis mellifera
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----------
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Bombus impatiens
-----------------------------------
----
-
Solenopsis invicta
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Atta cephalotes
------------------------------
Nasonia vitripennis
-------
------------------------
-
Drosophila virilis
----------------------------
Drosophila mojavensis
----------------------------
Drosophila melanogaster
----------------------------
Drosophila yakuba
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-
Drosophila erecta
----
----------------------
----
----
Drosophila sechellia
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Drosophila simulans
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-------
--------
Drosophila ananassae
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-
Drosophila pseudoobscura pseudoobscura
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Drosophila persimilis
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----------
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Drosophila willistoni
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Drosophila grimshawi
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Lucilia cuprina
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Megaselia scalaris
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-
Anopheles darlingi
-------------------------------
----
Anopheles gambiae
----------
----------------------
----
-
Culex quinquefasciatus
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-------
Aedes aegypti
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------------------------
Belgica antarctica
----------------------------------------
Mayetiola destructor
----------------------------
Tribolium castaneum
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-
Dendroctonus ponderosae
-
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Anoplophora glabripennis
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Zootermopsis nevadensis
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Strigamia maritima
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-
Tetranychus urticae
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----------
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Sarcoptes scabiei
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--------
Ixodes scapularis
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Stegodyphus mimosarum
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-
Helobdella robusta
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Capitella teleta
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Crassostrea gigas
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-
-
Lottia gigantea
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Octopus bimaculoides
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Adineta vaga
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Lingula anatina
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Schistosoma mansoni
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Strongylocentrotus purpuratus
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Mnemiopsis leidyi
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Amphimedon queenslandica
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Trichoplax adhaerens