Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Nematostella vectensis (Nematostella vectensis CH2 x CH6)
-------
Thelohanellus kitauei (Thelohanellus kitauei)
-----------------------------------------------
-
Folsomia candida str. VU population (Folsomia candida)
----------
Orchesella cincta (Orchesella cincta)
----------
-
Rhodnius prolixus (Rhodnius prolixus)
----------
----
Cimex lectularius (Cimex lectularius)
--------------------------------------
--------
Acyrthosiphon pisum (Acyrthosiphon pisum)
---------------------
Pediculus humanus (Pediculus humanus corporis)
---------------------
-
Drosophila mojavensis (Drosophila mojavensis)
----------------
Drosophila virilis (Drosophila virilis)
--------------------
-
Drosophila persimilis (Drosophila persimilis)
-------------------
Drosophila pseudoobscura (Drosophila pseudoobscura pseudoobscura)
-------------------
Drosophila erecta (Drosophila erecta)
-------------
-------
Drosophila yakuba (Drosophila yakuba)
----------------
----
-
Drosophila simulans (Drosophila simulans)
-------------------
----
Drosophila sechellia (Drosophila sechellia)
-------------
-------------
Drosophila melanogaster (Drosophila melanogaster)
-----------------------------
Drosophila ananassae (Drosophila ananassae)
------------------------------
Drosophila willistoni (Drosophila willistoni)
-------------------------------
Drosophila grimshawi (Drosophila grimshawi)
-------
-------
--------------------
Teleopsis dalmanni (Teleopsis dalmanni)
--------------------------
-
Musca domestica (Musca domestica)
-------------------------
Stomoxys calcitrans (Stomoxys calcitrans)
-------------------------
-
Glossina fuscipes fuscipes (Glossina fuscipes fuscipes)
----------------------------
Glossina palpalis (Glossina palpalis gambiensis)
--------------------
------------
-
----
Glossina austeni (Glossina austeni)
-------------------------
-
Glossina morsitans (Glossina morsitans morsitans)
----------------------------
Glossina pallidipes (Glossina pallidipes)
-----------------------------
Glossina brevipalpis (Glossina brevipalpis)
------------------------------
Lucilia cuprina (Lucilia cuprina)
-------------------------------------------
Megaselia scalaris (Megaselia scalaris)
---------------------------------------
-
Belgica antarctica (Belgica antarctica)
----------------------
Culicoides sonorensis (Culicoides sonorensis)
----------------------
-
Aedes albopictus (Aedes albopictus)
-------------------
----------------
----
Aedes aegypti (LVP_AGWG) (Aedes aegypti)
----------------
-----------------
Culex quinquefasciatus (Culex quinquefasciatus)
-------------------------------------------
-
Anopheles albimanus (Anopheles albimanus)
----------------------------------
Anopheles darlingi (Anopheles darlingi)
-------------------------
-------
-
Anopheles sinensis (China) (Anopheles sinensis)
----------
------------------------
----
Anopheles sinensis (Anopheles sinensis)
--------------------------------
Anopheles atroparvus (Anopheles atroparvus)
----------------------------
-
Anopheles coluzzii (Anopheles coluzzii)
-------------------------------
Anopheles coluzzii (Ngousso) (Anopheles coluzzii)
----------------------
--------
Anopheles arabiensis (Anopheles arabiensis)
-------------------------
-----
Anopheles gambiae (Anopheles gambiae)
--------------------------------
Anopheles merus (Anopheles merus)
----------------
-------
--------
Anopheles quadriannulatus (Anopheles quadriannulatus)
-------
--------------------------
Anopheles melas (Anopheles melas)
------------------------------------
Anopheles epiroticus (Anopheles epiroticus)
----------------------------
-
Anopheles stephensi (Anopheles stephensi)
----------------------
-----
----
Anopheles stephensi (Indian) (Anopheles stephensi)
-----------------------------
Anopheles maculatus (Anopheles maculatus)
------------------------------
-
Anopheles dirus (Anopheles dirus)
-------------
----------
Anopheles farauti (Anopheles farauti)
----
----------------------
Anopheles culicifacies (Anopheles culicifacies)
---------------------------------
-
Anopheles funestus (Anopheles funestus)
-------------------------
Anopheles minimus (Anopheles minimus)
----------------------------------------------
-
Lutzomyia longipalpis (Lutzomyia longipalpis)
-------------------------
Phlebotomus papatasi (Phlebotomus papatasi)
--------------------------------------------------
Mayetiola destructor (Mayetiola destructor Kansas Great Plain)
----------------------
Melitaea cinxia (Melitaea cinxia)
----------------------
-
Heliconius melpomene (Heliconius melpomene)
----------
--------------------------------------
----
Danaus plexippus (Danaus plexippus)
-----------------------------
Bombyx mori (Bombyx mori)
-------------------------
-
Bombus impatiens (Bombus impatiens)
-------------------------
----
Bombus terrestris (Bombus terrestris)
-------------------------
--------
Apis mellifera (Apis mellifera)
------------------------------------------
--------
-
Solenopsis invicta (Solenopsis invicta)
----------------------------
Atta cephalotes (Atta cephalotes)
-------------------------------------
Nasonia vitripennis (Nasonia vitripennis)
-------------------------
Anoplophora glabripennis (Anoplophora glabripennis)
------------------------------------------------------
-
Dendroctonus ponderosae (Dendroctonus ponderosae)
----------
-------------
Tribolium castaneum (Tribolium castaneum Georgia GA2)
--------------------------------------------------------------
Zootermopsis nevadensis (Zootermopsis nevadensis)
----------------------
-
Daphnia magna (Daphnia magna)
-----------------------------------------------------------
----
Daphnia pulex (Daphnia pulex)
-----------------------
Lepeophtheirus salmonis (Lepeophtheirus salmonis)
--------------------------------------------------------------------
Strigamia maritima (Strigamia maritima)
------------------------
-
Ixodes scapularis (ISE6) (Ixodes scapularis)
-------------------
Ixodes scapularis (Ixodes scapularis)
----------------
----
-
Leptotrombidium deliense (Leptotrombidium deliense)
----------------------
----
Dinothrombium tinctorium (Dinothrombium tinctorium)
-
-------
----------------------------------------
----
--------
Tetranychus urticae (Tetranychus urticae)
---------------------------
Sarcoptes scabiei (Sarcoptes scabiei)
--------------------------------
Stegodyphus mimosarum (Stegodyphus mimosarum)
----------------
Caenorhabditis japonica (Caenorhabditis japonica)
----------------
Caenorhabditis brenneri (Caenorhabditis brenneri)
----------------
-
Caenorhabditis briggsae (Caenorhabditis briggsae)
----------------
----
Caenorhabditis elegans (Caenorhabditis elegans)
----------------------
Caenorhabditis remanei (Caenorhabditis remanei)
----------
--------------
Pristionchus pacificus (Pristionchus pacificus)
-------------------
----
Onchocerca volvulus (Onchocerca volvulus O. volvulus Cameroon isolate)
--------------------------
-
Brugia malayi (Brugia malayi)
------------------------------------------------------------
-------
Loa loa (Loa loa Cameroon SouthWest Province isolate)
---------------------------
Strongyloides ratti (Strongyloides ratti)
----------------------------
Trichinella spiralis (Trichinella spiralis)
--------------------
-
Capitella teleta (Capitella teleta)
-------------------
Helobdella robusta (Helobdella robusta)
-------
----------
-
Biomphalaria glabrata (Biomphalaria glabrata)
-----------------------------------------------------------------
-
----
Lottia gigantea (Lottia gigantea)
--------------------
Crassostrea gigas (Crassostrea gigas)
--------------------
Octopus bimaculoides (Octopus bimaculoides)
---------------------
Lingula anatina (Lingula anatina)
---------------------
Adineta vaga (Adineta vaga)
--------------------------------------------------------------------------
-
Strongylocentrotus purpuratus (Strongylocentrotus purpuratus)
-------------
Branchiostoma lanceolatum (Branchiostoma lanceolatum)
------------------------------------------------------------------------------
Hofstenia miamia (Hofstenia miamia)
------------------------------------------------------------------------------
Schistosoma mansoni (Schistosoma mansoni)
-------------------------------------------------------------------------------
Mnemiopsis leidyi (Mnemiopsis leidyi)
--------------------------------------------------------------------------------
Amphimedon queenslandica (Amphimedon queenslandica)
--------------------------------------------------------------------------------
Trichoplax adhaerens (Trichoplax adhaerens)