Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG9664 FBgn0031515

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Location

Primary_assembly 2L: 3,291,245-3,294,706 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 193 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9664-RB	FBtr0077605	2973	609aa	FBpp0077292	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8U2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG9664-RC	FBtr0077606	2953	283aa	FBpp0077293	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ01	-	-
CG9664-RD	FBtr0305575	2936	608aa	FBpp0294026	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEQ1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG9664-RA	FBtr0077607	2438	609aa	FBpp0077294	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8U2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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