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DB built by FlyBase

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Gene: Rbfox1 FBgn0052062

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Description

RNA-binding Fox protein 1

Gene Synonyms

Location

Primary_assembly 3L: 10,481,412-10,594,012 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 9 transcripts (splice variants) and 59 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rbfox1-RH	FBtr0305093	6692	962aa	FBpp0293630	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFQ7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Rbfox1-RJ	FBtr0305095	6610	889aa	FBpp0293632	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1B1R4Q5 Q9VT99	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RK	FBtr0305096	6097	921aa	FBpp0293633	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT98	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RM	FBtr0332985	5584	547aa	FBpp0305201	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1B1R4Q4 M9PF74	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RL	FBtr0305097	3944	858aa	FBpp0293634	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND74	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RE	FBtr0113418	3508	865aa	FBpp0112330	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU08	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RF	FBtr0113419	3413	763aa	FBpp0112331	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1B1R4Q5 A8JNQ5 Q8MSP1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RI	FBtr0305094	3244	796aa	FBpp0293631	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNQ4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rbfox1-RN	FBtr0473371	2966	614aa	FBpp0422975	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140HLF6 A0A4D6K632	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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