Summary
- Splice variants
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Sequence
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Metazoan Compara
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- Gene tree (Metazoa)
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- Gene tree (Insects)
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- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG46385 FBgn0286778

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Location

Primary_assembly 2R: 7,737,019-7,782,637 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 6 transcripts (splice variants) and 30 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG46385-RE	FBtr0474228	5129	1107aa	FBpp0423181	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4P7VA97 Q6AWD9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG46385-RC	FBtr0474226	5320	529aa	FBpp0423179	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z745	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG46385-RA	FBtr0474224	5129	877aa	FBpp0423177	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z743 Q8SXM4	-	-
CG46385-RB	FBtr0474225	4996	560aa	FBpp0423178	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SXN9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG46385-RF	FBtr0474229	4996	790aa	FBpp0423182	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4P7V9T9	-	-
CG46385-RD	FBtr0474227	2978	529aa	FBpp0423180	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z745	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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