Apis mellifera (DH4) vs Solenopsis invicta Synteny results

The syntenic regions between Apis mellifera (DH4) (Apis mellifera, Amel_HAv3.1) and Solenopsis invicta (Solenopsis invicta, Si_gnH) were extracted from their pairwise alignment in Ensembl Metazoa release 102. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 330 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Apis mellifera (DH4)

Uncovered: 101,314,406 out of 225,250,884
Covered: 123,936,478 out of 225,250,884

Uncovered: 12,368,080 out of 18,346,913
Covered: 5,978,833 out of 18,346,913

Solenopsis invicta

Uncovered: 265,085,350 out of 398,994,629
Covered: 133,909,279 out of 398,994,629

Uncovered: 16,054,268 out of 22,635,573
Covered: 6,581,305 out of 22,635,573